Good post Ed, very interesting.
The fuel injection system operates in a closed loop, so one symptom (like the misfire) could be caused by one of a multiple of reasons within the closed loop OR in the other external systems (such as the secondary ignition system).
Does your system have a method to allow it to be put into an open loop condition? I've also seen that, since the introduction of the OBDII standard, that scan tools have greatly reduced in price. When I left this industry in '98 this standard was just arriving and seems to now have made it so much easier to interrogate and fault find ECU based systems. Previously we used to sell a scan tool and then a HUGE box of interface cables to suit various vehicles.
I like the wet finger method, very useful. How do you test for spark though - hopefully not with your tongue
Cheers,
Craig.